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- November 2000
Biomics was the largest and most comprehensive
global genomics and proteomics congress in Europe.
The congress CD Rom and papers address the issues
surrounding the completion of the human genome,
including it's impact on drug research and development,
the use and access of this information, patenting
and the economic impact of gene research.
Please find 2 Executive Summaries from papers
presented at IBC Life Sciences, Biomics Congress.
Please click on one of the below options to view
the Executive Summary written from that presentation.
- Peptidomics
for human body fluids
- Z3
- a new system for 2D-Gel image analysis
For further information
and details of the comprehensive documentation
available from this event, please visit: www.Biomics.com
Details of Biomics 2001, will be available soon,
please visit to receive updates: www.Biomics.com
1. Peptidomics for human body fluids [top]
Michael Schrader and Peter Schulz-Knappe, BioVisioN
GmbH & Co. KG, Hannover, Germany (m.schrader@biovision.de)
Progress in sequencing the human genome results
in an increasing demand for data of gene products
and their processing. Besides proteins, peptides
play a central role in biological processes. Especially
in extracellular fluids, many peptides act as
biomolecular messengers. One of the most relevant
human sources is blood plasma containing the most
representative collection of peptides and protein
fragments of the entire body.
We developed and apply technologies to visualise
the multitude of peptides within a biological
sample which we call peptidomics. These technologies
are based on chromatographic separation and mass
spectrometric analysis. The initial overview is
performed by automated MALDI-MS generating a fingerprint
of more than thousand of the most prominent peptides
in mL amounts of human body fluids. This approach
thus complements 2D-PAGE analysis of proteins
through visualisation of peptides in a range from
about 0.5 to 20 kDa.
The Differential Peptide Display project aims
at the establishment of numerous disease-associated
peptide fingerprints from individual human samples
and the differential comparison with controls.
Diseases lead to differences in the composition
of blood, including changes in the peptide pattern
of plasma. Data analysis of peptide patterns from
patients with defined diseases compared to healthy
subjects reveals deviations as potential biomarkers.
Target peptides are selected and identified on
a molecular level using a Peptide Bank from more
than 100,000 L of human blood filtrate and a related
database of human circulating peptides.
2. Z3 - a new system for 2D-Gel image analysis
[top]
Zeev Smilansky, VP Proteomics, Compugen Limited,
72 Pinchas Rosen St., Tel-Aviv 69512, Israel (zeev@compugen.co.il)
2D-Gel electrophoresis is the leading method for
separating complex mixture of proteins. Despite
its usefulness, 2D-PAGE is hampered by difficulties
with the method and even more so the analysis
of the results. Z3 is a new software system by
Compugen, which relies on methods and usage paradigms
that are different than customary methods. Among
the novelties of the system are a complementary
color display, automatic, raw-image based registration,
and direct computation of differential expression.
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